2,067

Number of Spots Under Tissue

120

Mean Reads per Spot

39

Median Genes per Spot

Sequencing

Number of Reads 250,000
Valid Barcodes 84.76%
Sequencing Saturation 28.90%
Q30 Bases in CB+UMI 73.19%
GC Content 42.95%
Q20 Bases in RNA Read 98.05%
Q30 Bases in RNA Read 94.97%

Spots

Spots
Fraction Reads in Spots Under Tissue 95.51%
Mean Reads Under Tissue per Spot 55
Median UMI Counts per Spot 42
Median Genes per Spot 39
Total Genes Detected 10,297

Mapping

Reads Mapped to Genome 90.25%
Reads Mapped Confidently to Genome 70.10%
Reads Mapped Confidently to Intergenic Regions 7.46%
Reads Mapped Confidently to Intronic Regions 7.03%
Reads Mapped Confidently to Exonic Regions 55.60%

Sample

Sample ID demo
Sample Description
Chemistry Spatial Gene 3' v1
Include introns False
Transcriptome mm10_gencodeM13
Pipeline Version DynamicST-1.0.2

UMIs Detected

Clustering

Sequencing Saturation

Median Genes per Spot